Linker filter

CPT3: An Integrated Package for ChIA-PET, HiChIP and PLAC-Seq data analysis.

Linker filter

We provide auto linker detect and filtering function in CPT3.

• quality control for raw sequencing ChIA-PET, HiChIP and PLAC-Seq data

• Linker filtering for ChIA-PET data and BL-HiChIP data

$ java -jar ChIA-PET.jar --autolinker true \
detect linker by our program, true [default] or false, then no need provide --linker and --mode paramater.

Tip

For feature requests or bug reports please open an issue on github.